noodles

Yeah, there is actually a pretty big shift towards Rust in the comp bio / bioinformatics community. Nature even wrote a feature article about it a couple years ago: Why scientists are turning to Rust https://www.nature.com/articles/d41586-020-03382-2 They mention the Rust-Bio [1] project by well known Snakemake author Johannes Köster & co, and there are some other widely used libraries like needletail [2] and noodles [3]. A cool smaller tool developed by performance wiz Ragnar Groot Koerkamp which was just published is Sassy [4] [5]. He has also been involved in developing some high performance SIMD based stuff (minimizers) [6]. [1] https://github.com/rust-bio/rust-bio [2] https://github.com/onecodex/needletail [3] https://github.com/zaeleus/noodles [4] https://github.com/RagnarGrootKoerkamp/sassy [5] https://academic.oup.com/bioinformati

St. Jude Children's Research Hospital | Principal Software Engineer, Rust Genomics Infrastructure | Memphis, TN | ONSITE (2x/week onsite) or REMOTE | https://www.stjude.org/ St. Jude Children's Research Hospital is hiring Rust software engineers to rebuild the genomics ecosystem in Rust. We work at the intersection of computer science and genomics, and we're trying to build a better foundation upon which genomics can be done using Rust. Come work with the individuals that wrote the Rust-based bioinformatics library, noodles (https://github.com/zaeleus/noodles), sprocket (https://github.com/stjude-rust-labs/wdl and https://github.com/stjude-rust-labs/sprocket), as well as many other projects (https://github.com/stjude-rust-labs). NOTE that prior experience in bioinformatics or biology is NOT required for any of the positions below. You mus

St. Jude Children's Research Hospital | Principal Software Engineer, Rust Genomics Infrastructure | Memphis, TN | ONSITE or REMOTE | https://www.stjude.org/ St. Jude Children's Research Hospital is hiring Rust software engineers to rebuild the genomics ecosystem in Rust. We work at the intersection of computer science and genomics, and we're trying to build a better foundation upon which genomics can be done using Rust. Come work with the individuals that wrote the Rust-based bioinformatics library, noodles (https://github.com/zaeleus/noodles), sprocket (https://github.com/stjude-rust-labs/wdl and https://github.com/stjude-rust-labs/sprocket), as well as many other projects (https://github.com/stjude-rust-labs). NOTE that prior experience in bioinformatics or biology is NOT required for any of the positions below. You must be interested i

Just use noodles instead: https://github.com/zaeleus/noodles/

St. Jude Children's Research Hospital | Principal Software Engineer, Rust Genomics Infrastructure | Memphis, TN | ONSITE or REMOTE | https://www.stjude.cloud/ The St. Jude Cloud (https://stjude.cloud) project is hiring Rust software engineers to rebuild the genomics ecosystem in Rust. We work on the forefront of computational genomics by applying advanced computational techniques to analyzing genomics data then sharing that data with the world. Come work with the individuals that wrote the Rust-based bioinformatics library, noodles (https://github.com/zaeleus/noodles), as well as many other projects (https://github.com/stjude-rust-labs). NOTE that prior experience in bioinformatics or biology is NOT required for any of the positions below. You must be interested in learning though! If you'd like to get a sense of what you'd be learning, c

St. Jude Children's Research Hospital | Principal/Senior Staff/Staff Software Engineer, Rust Genomics Infrastructure | Memphis, TN | ONSITE or REMOTE | https://www.stjude.cloud/ The St. Jude Cloud (https://stjude.cloud) project is hiring Rust software engineers to rebuild the genomics ecosystem in Rust. We work on the forefront of computational genomics by applying advanced computational techniques to analyzing genomics data then sharing that data with the world. Come work with the individuals that wrote the Rust-based bioinformatics library, noodles (https://github.com/zaeleus/noodles), as well as many other projects (https://github.com/stjude-rust-labs). NOTE that prior experience in bioinformatics or biology is NOT required for any of the positions below. We're just looking for amazing engineers, but rest assured, we teach biology/geno

St. Jude Children's Research Hospital | Staff Software Engineer, Rust Genomics Infrastructure | Memphis, TN | ONSITE or REMOTE | https://www.stjude.cloud/ The St. Jude Cloud (https://stjude.cloud) project is hiring Rust software engineers to rebuild the genomics ecosystem in Rust. We work on the forefront of computational genomics by applying advanced computational techniques to analyzing genomics data then sharing that data with the world. Come work with the individuals that wrote the Rust-based bioinformatics library, noodles (https://github.com/zaeleus/noodles), as well as many other projects (https://github.com/stjude-rust-labs). NOTE that prior experience in bioinformatics or biology is NOT required for any of the positions below. We're just looking for amazing engineers, but rest assured, we teach biology/genomics/bioinformatics fro